Written By: Michael Vale
Reviewed By: Bridgette Austin, Esq., EA, Co-Founder and Tax Attorney
Last Reviewed: September 18, 2025
Yes. If you have an IRS installment agreement (also called an IRS payment plan) and you still owe back taxes, the IRS applies your federal tax refund to that balance until the debt is paid off. It happens automatically when you file, you cannot opt out of it, and you still owe your monthly payment.
Your state refund is a different story, and that is where people get tripped up. This guide covers both the federal side and the state side, including how Michigan handles it.

How an IRS Installment Agreement (Payment Plan) Works
An installment agreement lets you pay back taxes over time instead of in one lump sum. Installment agreement and payment plan mean the same thing. The IRS uses both terms for the same setup, and it helps when you owe more than you can pay at once.
When you set one up, you agree to a fixed monthly payment until the balance is gone. Interest and late-payment penalties keep adding up until the debt is paid off, but the agreement stops harder collection actions like wage garnishment, bank levies, and property liens as long as you stay current.
One term of every agreement catches people off guard. While your plan is active, the IRS keeps any federal refund you would have received and puts it toward your unpaid balance. Under the IRS installment agreement rules, your future refunds are applied to your tax debt until it is paid in full.
Does the IRS Keep Your Federal Refund During a Payment Plan?
Yes. If you are on a payment plan and still owe back taxes, the IRS keeps your federal refund and applies it to what you owe. This is automatic and required by law.
The sequence looks like this:
- You file your federal return for the year.
- The IRS works out your refund from your withholding and credits.
- Instead of the money coming to you, it goes straight to your unpaid balance.
- If the refund is larger than the balance, the IRS takes what it needs to close out the debt and sends you the rest.
This repeats every year until the full balance, including penalties and interest, is paid off. It is called a refund offset. An offset is not the same as a levy, and that difference decides what happens to your state refund.
Will the IRS Take My State Refund If I’m on a Payment Plan?
This is the part the federal answer leaves out, and it has a different answer.
Your state refund can be taken for a federal tax debt through the State Income Tax Levy Program, or SITLP. Under SITLP, the IRS matches federal balances against refund records in states that take part, and it can levy (take) your state income tax refund. Michigan takes part in the program.
But there is a real protection here. SITLP is a levy, not an offset. By law, the IRS cannot issue a levy while your installment agreement is pending or in effect. That rule is Internal Revenue Code section 6331(k), and the IRS also excludes payment-plan accounts from its automated levy programs. So while your plan is active and in good standing, your state refund is generally safe from SITLP, even though your federal refund still goes to your balance.
There is one exception worth knowing. SITLP runs on automated weekly data files between the IRS and the states, so once in a while an active agreement gets missed and a state refund is levied by mistake. If that happens to you, it is a correctable error. Contact the IRS, bring in the Taxpayer Advocate Service if you need to, and you generally have appeal rights. A tax professional can move it faster.

Will Michigan Take My State Tax Refund While I’m on a Payment Plan?
If your debt is to the State of Michigan rather than the IRS, the answer is yes, even on an approved state payment plan.
The Michigan Department of Treasury states the rule directly. Michigan law allows the offset of an income tax refund or credit to any assessed liability until the account is paid in full, even if you are on an approved installment agreement.
And like the federal rule, the offset does not replace your monthly payment. Michigan says your regular monthly payment must still be made to avoid defaulting on your installment agreement. Skip a payment because your refund was kept, and you can default the plan and set off collection.
Michigan can reach your federal refund too. Through the Treasury Offset Program, the state certifies a past-due Michigan income tax debt and has your federal refund intercepted to pay it, after a 60-day notice.
Quick Reference: Whose Refund, Whose Debt
| Your situation | What happens to your refund | Monthly payment still due? |
| Federal refund, you owe federal back taxes | Applied to your balance automatically (offset), every year until it is paid off | Yes |
| State refund, you owe federal back taxes | Can be levied through SITLP, but an active payment plan generally protects it | Yes |
| Michigan refund, you owe Michigan back taxes | Kept by Michigan Treasury even on an approved payment plan | Yes |
| Federal refund, you owe Michigan back taxes | Can be intercepted for the state through the Treasury Offset Program (60-day notice) | Yes |

Why the IRS Applies Your Refund to Your Balance
Federal law requires the IRS to put an overpayment toward what you owe before sending any money back to you. That is Internal Revenue Code section 6402. Two things come out of it. Your balance drops faster, because every applied refund lowers the total and can shorten your plan. And the money keeps working on the debt instead of coming back to you while a balance is still open.
Can I Skip My Next Payment if My Refund Was Taken?
No. A lot of people think that once the IRS applies their refund, they can skip the next scheduled payment. That is not how it works, at the federal level or in Michigan.
Your agreement still needs a monthly payment on time, whether or not a refund was applied. The two are separate. The refund offset is automatic and happens when your return is processed. The monthly payment is a contract term. Interest and penalties keep running until the balance hits zero. Miss a payment and the plan can default, and then the IRS or Michigan can demand the whole balance, file a lien, or take money from your bank account.
If you cannot make a payment because of real financial hardship, you may qualify for currently not collectible status. If penalties make up a big part of your balance, first-time penalty abatement may clear some of them. Ask about either one before you skip anything.
A Typical Refund Offset on a Payment Plan
Say Sarah owes back taxes and sets up a payment plan with a fixed monthly amount. A few months later she files her return and qualifies for a refund from the Earned Income Tax Credit and some over-withholding.
Here is how it plays out:
- The IRS applies her whole refund to her balance.
- Her total debt drops by that amount.
- She still owes her regular payment that month to stay in good standing.
- If she skips it, the IRS can end the agreement and start collection again.
Her state refund that year is a separate question. Her federal plan is active and current, so it is generally safe from a SITLP levy, though she should check that her IRS account shows the agreement.

The Treasury Offset Program and Your Refund
The Treasury Offset Program, or TOP, is run by the Bureau of the Fiscal Service. It collects past-due debts owed to federal and state agencies by holding back federal payments, including tax refunds.
Here is how it runs:
- Federal and state agencies report past-due debts to the Treasury.
- The IRS matches your refund against the TOP database.
- If there is a match, your refund goes toward that debt.
- You get a written notice showing how much was taken and which debt it paid.
TOP can pull your federal refund for more than back taxes. It also reaches past-due state income taxes (this is how Michigan gets your federal refund), past-due child support, unemployment compensation debts owed to a state, and certain federal non-tax debts such as defaulted student loans. Because they all run through one program, more than one offset can hit the same refund.
How to Stay Compliant and Protect Your Refund
- Set up direct debit so you never miss a due date.
- Keep paying every month, even in a year the IRS takes your refund. The two do not cancel out.
- Fix your withholding or estimated payments so you are not overpaying just to watch the refund get taken. Money kept in your paycheck is money an offset cannot reach.
- Check your IRS account online to confirm the plan is active and see how payments and offsets post.
- File every future return on time. A late or missing return can default the agreement.
- Call the IRS before you miss a payment if your finances change.
When to Get Help
Refunds, SITLP levies, and state interceptions get tangled fast when you owe both the IRS and the State of Michigan, or when a levy hits an account that should have been protected. If a refund was taken while your plan was active, or you are trying to hold a plan in good standing across both federal and state debt, a tax attorney or enrolled agent can sort out which rule applies and get an improper levy reversed.
Austin & Larson Tax Resolution handles IRS and State of Michigan tax debt. Call (866) 668-2953 for a free consultation, Monday through Friday, 8am to 6pm.
FAQs
Will the IRS take my state refund if I am on a payment plan?
Generally no, as long as your payment plan is active and in good standing. The IRS takes state refunds for federal tax debt through the State Income Tax Levy Program, which is a levy, and the law bars the IRS from levying while a payment plan is in effect. Your federal refund is still applied to your balance, because that is an offset rather than a levy. If a state refund is taken while your plan is active, it is an error you can get reversed.
Will the IRS take my Michigan state refund while I’m on a payment plan?
If you owe the State of Michigan, yes. The Michigan Department of Treasury offsets your state refund against a Michigan balance even if you are on an approved state installment agreement, and you still have to make your monthly payment. If you owe only the IRS, your Michigan refund is generally safe while your federal plan is active.
Is a payment plan the same as an installment agreement?
Yes. Payment plan and installment agreement are two names for the same arrangement to pay your balance over time. The IRS and the State of Michigan both use installment agreement as the formal term.
Do I still need to make my monthly payment if my refund was taken?
Yes. A refund offset does not count as your monthly payment. Missing a scheduled payment can default your agreement and restart collection, at both the federal and Michigan level.
Will my refund offset shorten my payment plan?
It can. Applying your refund lowers your total balance, so you may reach zero sooner while keeping the same monthly payment.
What happens if my refund is larger than what I owe?
The IRS applies what it needs to pay off the balance and sends you the difference. Once the debt is paid, the agreement is satisfied.
Can debts other than taxes be taken from my refund?
Yes. Through the Treasury Offset Program, your federal refund can also go toward past-due child support, state income taxes, unemployment compensation debts, and defaulted federal student loans. These can happen alongside a tax offset.

Bridgette Austin, Esq., EA, spent three years at Michigan State University’s Tax Clinic representing low-income taxpayers before the IRS – two as a student clinician, one as a post-graduate fellow. That work shaped her practice. A Bellaire, Michigan native with a Northern Michigan University bachelor’s and an MSU law degree, she now resolves IRS and State of Michigan tax debt cases at Austin & Larson.

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